PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.006G269200.2
Common NameB456_006G269200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 447aa    MW: 48640.1 Da    PI: 9.897
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.006G269200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH54.91.6e-17190239255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f++Lr ++P++    ++K +Ka+ L +++eYI+ Lq
  Gorai.006G269200.2 190 RSKHSATEQRRRSKINDRFQRLRGIIPNS----DQKKDKASFLLEVIEYIQFLQ 239
                         899*************************9....8*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.1E-24185261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.02E-18187260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.742188238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-14190243No hitNo description
PfamPF000104.7E-15190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-13194244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MAEKPLPPPP PAPPPRSAEH VLPGGIGTYS ISHISTRAEG ALFTVARRSI SERNDETSNS  60
SSYTGSGFTL WEESAAKKGK TGKENTGETL AVREAAGKER QWATSSLERP SQSSSTNNHR  120
NSFSSLSSSR PSSKQKSFME MMKSAQYSDF EEDEDFNLKK ESSTTTRSKG ELRVKVDGKS  180
AANQKANTSR SKHSATEQRR RSKINDRFQR LRGIIPNSDQ KKDKASFLLE VIEYIQFLQE  240
KVHKHEGAYQ GWNHEPSKLM PWRNNETPTE NHADQSRAIN SMSTPSALVF SVAPNIPGTA  300
MNPVDSDMST ATTLRPVDLG PAMMNKTMPF AMSPQTNSIT SAQSTPLLPS DAETNGALPI  360
KKLKEQELTV EGGTISISSV YSQGLLNTLT QALQASGVDL SHASLSVQIE LGKQSSTGYT  420
APTSTLKGQG DSIHNSRGNT FKRWVC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012487600.10.0PREDICTED: transcription factor BIM1-like isoform X2
TrEMBLA0A0D2QHH70.0A0A0D2QHH7_G
STRINGPOPTR_0015s03550.11e-148(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.53e-79bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]